Gene putatively regulated by attenuation in C_acetobutylicum
Characteristics of the secondary structures
Terminator: Distance from promoter:148 nt. Distance to gene:52 nt. Distance to run of Ts=0 nt. Size=34 nt. Delta G=-20.50 kcal/mol
Antiterminator: Distance from promoter:89 nt. Size=65 nt. Delta G= -4.77 kcal/mol
Anti-antiterminator: Distance from promoter:74 nt. Size=45 nt. Delta G= -3.10 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TAGGAT-TATACT. It has a score value of 66.27 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TAGGATTTACAAGTCAAAAGGGGTATACTTTAGTTCCTATAGCATTATATTTAAAGAA
TAGAAGAGTCAAGGTAAAGTTGGCGGTTGCTGTAGGTAAGAAGAATTACGATAAGAGG
GACGCTTTAAAGGAAAAAGATGCTAGACGTGAAATAGATAGAGCTATGAAAAATAATA
GGTAGagtggtgtaagtttattaatttacaccactcttttatttctgttcttaatatattattatggtgtataatatatattaaggtaaacatgAT
G
CAC0717
Gene: CAC0717 GI: 15894005 BI number: CAC0717 GOG: ------- Description: Predicted membrane protei
AG
T A
A G
GC
AT
TA
AT
| G
A A
A A
G A
T A
G A
C T
G A A
A G G A
A A AT
A A TA
TA CG
TA G G
TA T |
CG A |
G A G | at
C T A | t t
A G A | ta
GC A | ta
GT A | gt
G A A | at
A G G | at
G A G | ta
A | A | gc
A | A | ta
T | AT gc
A | TA gc
GC TG ta
CG Ta gc
AT Cg at
TG Gt Gc
TA Cg At
tttatttctgttcttaatatattattatggtgtataatatatattaaggtaaacatgATG
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