Gene putatively regulated by attenuation in C_acetobutylicum
Characteristics of the secondary structures
Terminator: Distance to gene:100 nt. Distance to run of Ts=0 nt. Size=24 nt. Delta G= -9.10 kcal/mol
Antiterminator: Size=50 nt. Delta G= -4.40 kcal/mol
Anti-antiterminator: Size=31 nt. Delta G= -3.20 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GTTATAGTTACAAGTTCAGGGCAATTTTGTATGACTGCTTGTGAGATAGATGGAAGAC
CTGTAGGCGGAAAAGCGCCAGATATTATTAAAAAGCTTCAGACTGCCTTACTTAATGA
ATTTTTGGAAGAAACAAATTAAagtttaaaaatccataactacacaatttatgattagagtactttaaatttagtactcttttt
ctatgtaaaaaacataatgaacttagaataataaattagcatagcatattatagtaaataactagttaatgtgaaattttatttttcaggagatggtttt
ATG
CAC0793
Gene: CAC0793 GI: 15894080 BI number: CAC0793 GOG: TWOG0234 Description: Uncharacterized conserved protein of probably eukaryotic origi
a
c c
a a
t a
c t
at
at
ta
at
TT c |
A A cg
A A ta
A a at
Cg at
At a a aa
At a g a t
At a a t t
| a t g t t
| a t t ta
| a ta cg
G a gc at
A a at ta
At At gc
Gc At at
Gc Ta gc
Ta Ta at
ttttctatgtaaaaaacataatgaacttagaataataaattagcatagcatattatagtaaataactagttaatgtgaaattttatttttcaggagatggttttATG
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