                                                                        Gene putatively regulated by attenuation in C_acetobutylicum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:199 nt.     Distance to run of Ts=3 nt.   Size=29 nt.     Delta G=-10.00 kcal/mol
Antiterminator: Size=46 nt.     Delta G= -3.39 kcal/mol
Anti-antiterminator:   Size=30 nt.     Delta G= -3.30 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AGTATCAGATGGAAGTAAAGTTGTAAAATAAaattaaaatacaggtaaagagctgtcctatagttgtttttttatta
actataggcggcttttttttattgtaatttacgcttatttatcaactattttgtttaataaaatcgtaattttgtggtaaatataaaacaattaaaaaag
attcaactttgttacaagttaaggcgctttataatgattataacttcaacattaataaagattagtcgaaaaaaatcgataaataataaatactattata
aatcgattgaagaggtgttttaaATG

    CAC0805 Gene: CAC0805     GI: 15894092     BI number: CAC0805     GOG: COG0840     Description: Methyl-accepting chemotaxis protei            aa           a  g           t  a           g  g            gc            at            cg AA        at G  A      t  c TA       a  c        t AT       a  t      t  t |  A      a  a      t  t |  A      a  t      t  a |  a      t  a      t  t |  a      t  g       gt at       a  |       ta at       a  |       ta ta        At        gc ta        At        at ta        Tg        ta ta        At        at gt        At        ta ta        At        cg gc        At        cg                         cggcttttttttattgtaatttacgcttatttatcaactattttgtttaataaaatcgtaattttgtggtaaatataaaacaattaaaaaagattcaactttgttacaagttaaggcgctttataatgattataacttcaacattaataaagattagtcgaaaaaaatcgataaataataaatactattataaatcgattgaagaggtgttttaaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [NT] COG0840 Methyl-accepting chemotaxis protein ... can be seen here     ..................................................................................................................