                                                                        Gene putatively regulated by attenuation in C_acetobutylicum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:111 nt.     Distance to run of Ts=1 nt.   Size=29 nt.     Delta G=-10.20 kcal/mol
Antiterminator: Size=75 nt.     Delta G= -4.71 kcal/mol
Anti-antiterminator:   Size=65 nt.     Delta G=-10.64 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TCTATATTAGAACCGTTAAATATTGCAGATTTGGATAAAGAGCAGAAGATGAACTTAT
CTGATATTCTTCACAAAAAAATAAGTGAAGAGTTGAAGTTAATAAAGCAGGATTAAat
tacatattttatatcaattttattttagataaaattaagggtactttaagaaggatttaaagtactcctttgttatataatgaatatagtttaatagtga
aattagaggatataggggggataatattagtttataattttaatattttagtatggatgagttaactcaattaaatggaattatATG

    CAC0966 Gene: CAC0966     GI: 15894253     BI number: CAC0966     GOG: NOG29752     Description: Predicted membrane protei            ca           a  t           t  a           t  t            at            At            At            Ta           |  t            Ta            At AA        Gc A  A      G  a A  T      A  a A  A      C  | A  A       Gt CG        At AT        At CG        At TA        Ta TA        At CG        At TA       |  t TG       |  t AT       |  a T  T      |  g A  G      |  a G  |      |  t T  |      |  a C  |      |  a T  |      |  a A  |      |  a TA       |  t        g TA       |  t      a  g CG       |  a      a  a AT       |  a       gt AT       |  g       at G  A      |  g       at T  A      |  g       ta A  T      T  t       ta G  A       Ta        ta A  A       Gc        cg A  A       At        at G  |       At        ta A  |       Gt        gc CG        Ta        gt GC        Ta        gc                         ctttgttatataatgaatatagtttaatagtgaaattagaggatataggggggataatattagtttataattttaatattttagtatggatgagttaactcaattaaatggaattatATG     ..................................................................................................................