Gene putatively regulated by attenuation in C_acetobutylicum
Characteristics of the secondary structures
Terminator: Distance from promoter:134 nt. Distance to gene:33 nt. Distance to run of Ts=1 nt. Size=26 nt. Delta G= -9.30 kcal/mol
Antiterminator: Distance from promoter:79 nt. Size=63 nt. Delta G= -3.09 kcal/mol
Anti-antiterminator: Distance from promoter:61 nt. Size=40 nt. Delta G= -3.51 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTAATA-TATATT. It has a score value of 64.93 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTAATATCATATACAGATGTGTGTTCTATATTTATGAAATTTCCAATGTATTTAGCTC
CTAGCTATTGGCTTGTACTTATGTTTACATTTACCAGCATATTTGTATCAGCAAGATC
AATAGTTAAGTATTGCTTTCATTAAaaaaaaaaggtatgattatttataagaaactctaattaaatttagagttttcttttc
tagttagaaagctttattgaaaggaacttaataATG
CAC0967
Gene: CAC0967 GI: 15894254 BI number: CAC0967 GOG: NOG29752 Description: Probably membrane protei
Aa
A a
T a
T a
A a
C a
Ta
Ta
Tg
Cg
Gt
Ta
G | t
A A | g
A T | a
C C T t
G A At
A A Ta
C T Gt
T A At
A G At aa
T T Ta t a
GT T t t t
TA G a at
TA A a at
TG T g ta
AT A a cg
TA A a ta
| T C a cg
AT T c at
CG At at
GC Gc at
AT At gt
cttttctagttagaaagctttattgaaaggaacttaataATG
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