Gene putatively regulated by attenuation in C_acetobutylicum
Characteristics of the secondary structures
Terminator: Distance to gene:178 nt. Distance to run of Ts=0 nt. Size=35 nt. Delta G=-15.00 kcal/mol
Antiterminator: Size=69 nt. Delta G= -5.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
gaaaccatactgcaagtatatattattgaattacaaagaaaaagtaggataaaacaaaatattattagtaaaaaagttgtgcaagcaatgaagagaaaac
ttttggcttgcacatttttattttgcctcataaaaatttaatatagaatttaataatattaatcaatagaaataccaaggaatatagatgatgtcttaaa
atagggtaaagaagtaacagaagaaatatataaactttctattcaattaaatggagccaaaacagcattaataaatgcagataagaatagttcgaataca
ATG
CAC1004 --- CAC1005
Gene: CAC1004 GI: 15894291 BI number: CAC1004 GOG: ------- Description: Predicted membrane protein
Gene: CAC1005 GI: 15894292 BI number: CAC1005 GOG: ------- Description: Uncharacterized protein similar to Cylindrotheca fusiformis plasmid hypothetical protein (GI:99319
a
a a
c a
a t
a a
at
at
ta
at
gt
g a
a g
t t
g a
a a
a a
a a
a a
a a aa
g g g a
a | a a
at gc
at at
cg at
at gt
tg t t
| c a g
t a a |
a a cg
a g gc
gc at
ta at
ta cg
at gc
tg ta
ta gc
atttttattttgcctcataaaaatttaatatagaatttaataatattaatcaatagaaataccaaggaatatagatgatgtcttaaaatagggtaaagaagtaacagaagaaatatataaactttctattcaattaaatggagccaaaacagcattaataaatgcagataagaatagttcgaatacaATG
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