                                                                        Gene putatively regulated by attenuation in C_acetobutylicum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:138 nt.     Distance to run of Ts=0 nt.   Size=40 nt.     Delta G=-12.10 kcal/mol
Antiterminator: Size=52 nt.     Delta G= -6.30 kcal/mol
Anti-antiterminator:   Size=54 nt.     Delta G= -9.33 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TGCAATAGCTGATATCCTAAAAAAGGACACTATTAACTTAAAAAAAGAAGCTTCTGAA
ATAAATAAATAAagcttctgataaatagtttaaaataaaaaacataagcatatatataaagaggtaaatgaggtaataactttaaactttc
atttaccttttttatgcatttattttataaataataataataatattacattgcattatatataacttgaaaattccataaaaaaacatttataattaga
aagtaaaatatatataattaagcatgcaaagttctttagggggtaataataATG

    CAC1053 Gene: CAC1053     GI: 15894340     BI number: CAC1053     GOG: COG0438     Description: LPS glycosyltransferas AA        aa T  A      a  a A  T      t  a A  A      a  a A  A      a  c G  A      a  a T  T       at         c C  A       ta       a  t TA        ta       a  t Ta        tg       t  t Cg        gc       a  a Gc       |  a      a  a At        at        ta At        ta        gc Gc        at       |  t At       a  a       gt A  g       at        at A  a       ta        gc A  t       at        ta A  a      |  a       at A  a      g  a       at A  a       ta        at T  t       cg        ta Ta        ta        gc Cg        tg        gc At        cg        at At        gt        gt                         ttttatgcatttattttataaataataataataatattacattgcattatatataacttgaaaattccataaaaaaacatttataattagaaagtaaaatatatataattaagcatgcaaagttctttagggggtaataataATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [M] COG0438 Glycosyltransferase ... can be seen here     ..................................................................................................................