                                                                        Gene putatively regulated by attenuation in C_acetobutylicum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:138 nt.     Distance to run of Ts=0 nt.   Size=35 nt.     Delta G=-18.70 kcal/mol
Antiterminator: Size=63 nt.     Delta G= -8.23 kcal/mol
Anti-antiterminator:   Size=49 nt.     Delta G= -7.57 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ATTTTTCTTCAGACGGATACCTTGAAAAAGATACTAAAATTATCGTAGACGGTATAAC
CTATAAAATAAATGACAATGGTACTGCTACTGAGGTTAAAAATATTTAAtaattatatatgcag
aactgtatgcgacttttttgtccatgcagttcttattttttacttaaatctaaatgaatcaacaattaatatctttaacacttatgtaactatttgacat
tttttaatttttattgtattctttaaatattaagttaactttttgtaaaataatttcattataattaggaggctgtttATG

    CAC1078 Gene: CAC1078     GI: 15894363     BI number: CAC1078     GOG: -------     Description: Predicted phosphohydrolase, Icc famil            AT           A  A            AT            AT            AT            TA            TA AA        Gt T  A      |  a A  T      |  a A  G      |  t A  A      G  t A  C      A  a T  A      G  t A  A      T  a T  T      C  t CG       A  a       tt CG       T  t      t  t AT        Cg       t  t A  |       Gc        cg T  |       Ta        at A  |       Cg        gc TA       A  a      c  | GC        Ta        gc GT        Gc        ta CG        Gt        at A  |       Tg        tg GC        At        gc AT       |  a       ta TA        At        cg GC        Cg        at |  T      A  |       at CG        Gc        gc TA        Tg        at                         tattttttacttaaatctaaatgaatcaacaattaatatctttaacacttatgtaactatttgacattttttaatttttattgtattctttaaatattaagttaactttttgtaaaataatttcattataattaggaggctgtttATG     ..................................................................................................................