Gene putatively regulated by attenuation in C_acetobutylicum
Characteristics of the secondary structures
Terminator: Distance from promoter:150 nt. Distance to gene:20 nt. Distance to run of Ts=0 nt. Size=26 nt. Delta G= -7.10 kcal/mol
Antiterminator: Distance from promoter:85 nt. Size=72 nt. Delta G= -9.10 kcal/mol
Anti-antiterminator: Distance from promoter:68 nt. Size=43 nt. Delta G= -6.40 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TAGAAT-TATAAT. It has a score value of 64.93 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TAGAATACCTACTCGTATTATTCAATATAATATGGGCATACAGTTTGATGGTATATAT
GGACGAGATACCGCAAGTCATGTACAAGCATGGCAATCATCTCATAGTTTAAAATCAG
ATGGGTTGTTTGGTTCTCAATCGTGGTTAACTTTATTGTCAAAATAAataaaaatagagaaaata
attccatgcaataaattacatggaattttattataaggagagatgtataaATG
CAC1107
Gene: CAC1107 GI: 15894392 BI number: CAC1107 GOG: ------- Description: Hypothetical protein, CF-36 famil
C
T A
G A
TA
TA
AT
TA
TA
Ta
C |
A |
At
Ta
Ta
G a
G a
Ta
Gt
C a
G T |
G T A |
G T A |
TG Cg
AT Ta
GT Cg
AT Ta
CG T |
TG G |
AT G | aa
AT Ta t a
A C Ta a t
A T Ta a t
T C Gt c a
TA Ta gc
TA Ta ta
GT | t at
A C Gt cg
T G Gc cg
AT Gc ta
CG Ta ta
TG At at
tttattataaggagagatgtataaATG
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