Gene putatively regulated by attenuation in C_acetobutylicum
Characteristics of the secondary structures
Terminator: Distance from promoter:153 nt. Distance to gene:68 nt. Distance to run of Ts=0 nt. Size=19 nt. Delta G= -6.80 kcal/mol
Antiterminator: Distance from promoter:89 nt. Size=69 nt. Delta G= -9.99 kcal/mol
Anti-antiterminator: Distance from promoter:64 nt. Size=36 nt. Delta G= -8.04 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TCTAAA-TAAAAT. It has a score value of 64.26 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TCTAAAATAAATAAAAAGTTTTCTAAAATTTTATATACAACAGAAGATGGGACAAACT
TTTTTGCCCCCGATTATAATTCTATTTTGCCCTATATTATTGGCGCAATACAAGAATT
AAGTGCCAAAAGTAAAAGTTTAGAAACTAGAGTAACTACTTTAGAAAATTCTATTCAA
GAGTTAAAAGCATCCAAATAGggtgttatttttatataaaaagaaagtgtaatgaaagcaagaatgttttatatcgtttagctat
aaatggttgctttttgGTG
CAC1112
Gene: CAC1112 GI: 15894397 BI number: CAC1112 GOG: ------- Description: Hypothetical protein, CF-11 famil
AC
A T
TA
GC
AT
GT
AT
TA
CG
| A
| A
| A
A A
AT
AT
GC
AT
TA
AG T T
A A T T
C A G C
A T A A
T T A A
A A A G
A A A A
CG T G
GT G T A
CG A T A T
GC A A A A
GC A A CG
TA A A Cg
TA C A Tg
A A CG At
TA GC Cg
TG TA Gt
AT GT At
atttttatataaaaagaaagtgtaatgaaagcaagaatgttttatatcgtttagctataaatggttgctttttgGTG
..................................................................................................................