Gene putatively regulated by attenuation in C_acetobutylicum
Characteristics of the secondary structures
Terminator: Distance to gene:18 nt. Distance to run of Ts=0 nt. Size=28 nt. Delta G=-11.80 kcal/mol
Antiterminator: Size=45 nt. Delta G= -5.60 kcal/mol
Anti-antiterminator: Size=40 nt. Delta G= -8.50 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TCAGGTGGTTACTGCGCAAAAAACTCAAAGTATAGTTAATTTTGCTGAGAATATTCCT
AATTTAATGGCGTCTATAAGAACACCAAAAATTATTTTACCTAGTAGTTTAAATGTTA
ATGGAAATAGTCCTAATTCTAGTGGATTAGCTAATCAAAGAGTCTTTCATATAAATAA
CCTAAATGTCCAAGCGAATGATGCAAAACAACTAATAAAAAGCTTGGAACTAATGGTT
GAAACAGGAGATTATTAAagtgttaggttttaaaatctaacacttctttttaataggaggttatttaaATG
CAC1119 --- CAC1118
Gene: CAC1119 GI: 15894404 BI number: CAC1119 GOG: ------- Description: Hypothetical protein
Gene: CAC1118 GI: 15894403 BI number: CAC1118 GOG: ------- Description: Phage related protei
C
A A
A G
A G
AC G A
A A TG
A A TA
A C GT
C T GT
G A TA
TA AT ta
AT AT t a
G A | A ta
T A | A ta
A A Ta gt
A A Cg gc
G A At at
CG A g ta
GC Gt ta
AT Gt gc
AT Ta ta
CG Tg gc
CG Cg at
TA Gt At
ctttttaataggaggttatttaaATG
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