Gene putatively regulated by attenuation in C_acetobutylicum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:195 nt.     Distance to run of Ts=0 nt.   Size=37 nt.     Delta G=-10.00 kcal/mol
Antiterminator: Size=48 nt.     Delta G=-10.90 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ATGCCATGTACAATGCAGGAATTAAAGGTGACAATGATGTTTTAGTACATATATTAAG
ACATACGTTTGCAACTCTATTATATCAAAGTGGAGAAGTAGATTTATTTCAGTTACAA
GAATTATTAGGACACGAAGATGTTTCTACAACCAGAATATACACAGATGTTTCTAAAG
AGCAATTAAAAAATGCAGTAGAAGCCAATCCTCTTAATAAGATATTTTGAatttttaatttat
agcaattagtatattgacttttttcatacgaattgctataattgattttgtgaggtgaaaaaaATG

    CAC1171 --- CAC1172 --- CAC1173


Gene: CAC1171     GI: 15894454     BI number: CAC1171     GOG: -------     Description: Hypothetical protein
Gene: CAC1172     GI: 15894455     BI number: CAC1172     GOG: -------     Description: Predicted integrase of XerC/XerD family, diverged
Gene: CAC1173     GI: 15894456     BI number: CAC1173     GOG: -------     Description: Hypothetical protei


 AT
C  A
 AT
 TA
 GT
 AT
 TA         T
 TA       A  C
 TG       T  A
 TA       A  A
 GC        TA
 TA        TG
 AT        AT
|  A       TG
 GC        CG
 TG        TA
|  T       CG
 AT       A  A
 AT       A  A
 CG        CG
A  C       GT
G  A       TA
 TA        TG
 GC        TA
 GT        GT
            TTATTTCAGTTACAAGAATTATTAGGACACGAAGATGTTTCTACAACCAGAATATACACAGATGTTTCTAAAGAGCAATTAAAAAATGCAGTAGAAGCCAATCCTCTTAATAAGATATTTTGAatttttaatttatagcaattagtatattgacttttttcatacgaattgctataattgattttgtgaggtgaaaaaaATG
    ..................................................................................................................