                                                                        Gene putatively regulated by attenuation in C_acetobutylicum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:139 nt.     Distance to run of Ts=0 nt.   Size=27 nt.     Delta G=-14.30 kcal/mol
Antiterminator: Size=33 nt.     Delta G= -5.10 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

agtatatGTGCTTCATGTGAATCCTTTTACGGTATTGAATGAGATAGATGCATCTGTGAGG
ACACCCACCTATCGTAGAGATAGGTGTCAAAATTGGGGTAACGGTATTTTGGATTTAC
ATTTGAATGTAGAGAGAGGTTTTAAAGACCTCTCTTTTTTTATTATACTTAATTATAA
TTTTTAGtgattttaagtgaattttagtaacatatttacaaaatatacatgattgagttgttctacataagaagataaataaatatgtatataat
aaatagtttaaaggggaggacttctaccTTG

    CAC1230 Gene: CAC1230     GI: 15894513     BI number: CAC1230     GOG: -------     Description: Hypothetical protei TG T  A TA AT         A CG       T  A AT       T  A TA        TG TG        TA TA        GC A  G       GC G  A       AT G  |       GC TG        AT TA        GC TG        AT TG        GT AT        AT             TTTTATTATACTTAATTATAATTTTTAGtgattttaagtgaattttagtaacatatttacaaaatatacatgattgagttgttctacataagaagataaataaatatgtatataataaatagtttaaaggggaggacttctaccTTG     ..................................................................................................................