Gene putatively regulated by attenuation in C_acetobutylicum
Characteristics of the secondary structures
Terminator: Distance from promoter:152 nt. Distance to gene:45 nt. Distance to run of Ts=0 nt. Size=19 nt. Delta G=-11.30 kcal/mol
Antiterminator: Distance from promoter:88 nt. Size=72 nt. Delta G= -8.70 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTGACT-TATAGT. It has a score value of 70.95 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGACTGAAGATGAAATTAGAATTATAGTTAAGGATGCAGCAGATAGCGTTGGTGCTA
GTAACATGAAGGACATGGGAAAAGTCATGTCGGCTTTAATGTCAAAAGTTAAAGGGCG
CGCAGATGGTTCCTTGGTAAGTAAACTTGTAAAAGAGTTTTTAAATAATAAATAAgaaa
atgaaggacctggtttatccaggtcttttttgttgtaattaaatcctttttccattcataaattagtatgaaagtgtgcgtttgagggtgagaggATG
CAC1290 --- CAC1291
Gene: CAC1290 GI: 15894572 BI number: CAC1290 GOG: NOG09693 Description: Uncharacterized protein, homolog of YQFC B.subtilis
Gene: CAC1291 GI: 15894573 BI number: CAC1291 GOG: NOG07111 Description: Uncharacterized protein, YQFD ortholog, related spoIV gene produc
AA
T A
G A
TG
TA
CG
AT
AT
AT
| T
| T
| A
| A
| A
| T
| A
| A
| T
| A
| A
| A
| T
| A
| A
T g
G a
A a
A a
Ta
Gt
G g
Ta
Ta
Cg
Cg
T | t
Ta t a
Gc t t
Gc gc
T t gc
A g ta
G | cg
A | cg
Cg at
Gt gc
ttttttgttgtaattaaatcctttttccattcataaattagtatgaaagtgtgcgtttgagggtgagaggATG
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