Gene putatively regulated by attenuation in C_acetobutylicum
Characteristics of the secondary structures
Terminator: Distance to gene:206 nt. Distance to run of Ts=0 nt. Size=21 nt. Delta G= -6.60 kcal/mol
Antiterminator: Size=76 nt. Delta G= -6.01 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GCATTAGATTGGTATAGTAAACAGGATATTACCTTAGGTGGTTAAtaaaatatagaatttttcgtaa
aaatcattctaaaagagaatgatttttatttttttggggcaaataaagctttaattattgataataataaaaaattcgagtttatttaacaataatctta
taagattgtaaaatttattgtttacatttgacaaaaaaaatagtattattagttgtaatgaagatatttcatattttataaaaaaatttactaatatgtt
atttttattaaacaggcgtgggggaataggattATG
CAC1433
Gene: CAC1433 GI: 15894712 BI number: CAC1433 GOG: ------- Description: Hypothetical protei
gt
c a
t a
ta
ta
| a
tt
tc
aa
at
gt
| c
| t
| a
| a
| a
| a
|
|
|
|
|
|
|
a
t
a
t
a |
a |
a |
a
t
A
A
T
T | a
G a a
G a g
T ta
G cg
G ta
A ta
T at
T cg
C ta
C at
ttttatttttttggggcaaataaagctttaattattgataataataaaaaattcgagtttatttaacaataatcttataagattgtaaaatttattgtttacatttgacaaaaaaaatagtattattagttgtaatgaagatatttcatattttataaaaaaatttactaatatgttatttttattaaacaggcgtgggggaataggattATG
..................................................................................................................