Gene putatively regulated by attenuation in C_acetobutylicum
Characteristics of the secondary structures
Terminator: Distance from promoter:147 nt. Distance to gene:59 nt. Distance to run of Ts=0 nt. Size=29 nt. Delta G= -7.30 kcal/mol
Antiterminator: Distance from promoter:95 nt. Size=64 nt. Delta G= -5.02 kcal/mol
Anti-antiterminator: Distance from promoter:71 nt. Size=27 nt. Delta G= -3.30 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTTAAA-TAAATT. It has a score value of 76.97 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTTAAATTTGCCTATGAATATCTTAAATTAAATCCCAAAGATTATATTTGGTTTGAGG
ATGATTTTGCATTTGATTTTCAGGATATGGAAAGATTAAGTAAGTTACCATTCGATGA
AAATTGGTGCTATAAAAATCCGAAGAATTTACTATAAtatcagttataaaattttttaaaagagtaaggagtt
atataaatcttactcttttttgcgagttgtagaaattgcaaaacaaaaattagatgatttttctggaacattgagagatTTG
CAC1442
Gene: CAC1442 GI: 15894721 BI number: CAC1442 GOG: ------- Description: Hypothetical protei
tc
a a
tg
At
At
Ta
At
Ta
C |
A |
Ta
Ta
Ta
At
At
Gt
At
At
Gt
| a
| a t
TG | a a a
A A C a t t
G A Cg t a
C A Ta g a
T A A g a a
T T A t gt
AT A a gc
CG A a at
CG A g at
AT T g ta
T | A | gc
TG Ta at
GC Cg gc
AT Gt at
tttttgcgagttgtagaaattgcaaaacaaaaattagatgatttttctggaacattgagagatTTG
..................................................................................................................