Gene putatively regulated by attenuation in C_perfringens

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:81 nt.    Distance to gene:60 nt.     Distance to run of Ts=2 nt.   Size=35 nt.     Delta G=-22.70 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: ATGACA-TATTAT. It has a score value of 65.6 and is shown in blue

ATGACAAGTAGCATATCTCCATGTATTATAAGAAATAAGAACAATGATTTATGTGAAT
ATTTAGTTCTACCTGTTAGAATAGCAAGATAAtttaaattagatttttataactatggtgagtttagtattgctaa
actcaccatagactattttttattttatttttttgaaaggagaaacaatgtaatttttaaatatacattgtgtgtataattATG

    CPE0003


Gene: CPE0003     GI: 18308985     BI number: CPE0003     GOG: COG2501     Description: conserved hypothetical protei


           t
         a  t
         t  g
          gc
          at
          ta
          ta
          ta
          gc
          at
          gc
          ta
          gc
          gc
          ta
          at
          ta
          cg
            actattttttattttatttttttgaaaggagaaacaatgtaatttttaaatatacattgtgtgtataattATG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[S] COG2501 Uncharacterized conserved protein ... can be seen here

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