Gene putatively regulated by attenuation in C_perfringens
Characteristics of the secondary structures
Terminator: Distance from promoter:56 nt. Distance to gene:71 nt. Distance to run of Ts=0 nt. Size=25 nt. Delta G=-10.40 kcal/mol
Antiterminator: Distance from promoter:20 nt. Size=43 nt. Delta G= -5.90 kcal/mol
Anti-antiterminator: Size=68 nt. Delta G= -9.51 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTGATG-TATTTT. It has a score value of 72.29 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGATGTAAAAGATATTATATGCTATTTTGTAGGAACTTTAATTTTAATATTTTGGGA
AGTTATTAATAAAGAGTAAtgatttttagtgagttcaagtttggggctcactttttttacataaataagaataggatagcatatta
tttatagagaatattatgtaatagtattaggaggatcctattGTG
CPE0033
Gene: CPE0034 GI: 18309016 BI number: CPE0034 GOG: NOG42855 Description: hypothetical protei
TT
A T
T T
CG
GT
TA
| G
A G
T A
A A
T C
T T
A T
T T AA
A A A G
G A T A
AT A G
AT AT
AT TA
AT TA
| A At
TA Tg
GT Ta t
TA Gt g t
AT At a t
GT At a g
T T Gt cg
T T Gt tg
TG | a tg
CG G g gc
CG T t at
TA Tg gc
A A Ta ta
CG Tg gc
AT At at
ttttttacataaataagaataggatagcatattatttatagagaatattatgtaatagtattaggaggatcctattGTG
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