                                                                        Gene putatively regulated by attenuation in C_perfringens

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:190 nt.     Distance to run of Ts=0 nt.   Size=34 nt.     Delta G=-13.80 kcal/mol
Antiterminator: Size=49 nt.     Delta G= -3.40 kcal/mol
Anti-antiterminator:   Size=40 nt.     Delta G= -8.20 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ATAAATTTAAAAGAACTTAAGGAAGAACTGTGTAGTAAACAAATAAGTTTAGTATAGt
ttttaagggtataaaaataagattaagatatttatcttaatcttatttttttatatattaatttgcttaaattaaatattttaaagttttatataataga
ttttgttacataaataatatcttaatatcacttcgtatataactaaatacttataatatttatataaaataagtatttttacttataagagaaagggtat
ataataaaatcatcaagtgagtaggaagtggtgattagatagATG

    CPE0127 Gene: CPE0127     GI: 18309109     BI number: CPE0127     GOG: -------     Description: hypothetical protei            gg           g  t           a  a            at AT        ta A  A       ta A  A       ta CG        ta AT        ta        tt AT        Gt       a  t AT       A  a       ta TA       T  a       at G  G      A  g       gc A  |       Ta        at T  |       Gt        at GT        At        ta TA        Ta        ta GT        Ta        at TA        Tg        gc CG       G  a       at At       A  |       at At        At        ta Gt        Ta        at At        At        at At        At        at                         ttttatatattaatttgcttaaattaaatattttaaagttttatataatagattttgttacataaataatatcttaatatcacttcgtatataactaaatacttataatatttatataaaataagtatttttacttataagagaaagggtatataataaaatcatcaagtgagtaggaagtggtgattagatagATG     ..................................................................................................................