                                                                        Gene putatively regulated by attenuation in C_perfringens

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:137 nt.     Distance to run of Ts=0 nt.   Size=27 nt.     Delta G=-13.20 kcal/mol
Antiterminator: Size=70 nt.     Delta G= -8.62 kcal/mol
Anti-antiterminator:   Size=51 nt.     Delta G= -6.96 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

taatggttttatagttaaagatatatcagattattcacatgaagaagaggattgattgagaataaaatggttgaaataattttttatgaattttctaata
aattaagaaaattttaaattaaaaagtacaaaaaagctcaagagtaattcttgagcttttttattgtattaatgaataccacaggttctacctgtggttc
taaaaagcttatagctatgagtagaaaaaaataaaacctccgatgtaaaataatagtaggtttgccgaccaaaacttaattttacaaggaggtgtccgaa
ATG

    CPE0139 Gene: CPE0139     GI: 18309121     BI number: CPE0139     GOG: COG1943     Description: probable transposas             a           a  a           t  t           a  t           a  a            ta            cg            ta            ta            ta            ta            at   t        at g  t       gt g  g      |  t t  a      |  a a  a      |  a a  a      |  a a  t      t  t a  a       at ta        ta at        ta at        ta gt        ta at        ta         a gt        tg       t  a t  t       at        gt ta       |  a       at at       a  c       gc g  g      t  a       at ta       a  a       at ta       a  a       cg at       a  a       ta gt       g  a       cg gt        ta        gc at        tg        at gc        gc        at at        gt        at                         tttattgtattaatgaataccacaggttctacctgtggttctaaaaagcttatagctatgagtagaaaaaaataaaacctccgatgtaaaataatagtaggtttgccgaccaaaacttaattttacaaggaggtgtccgaaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [L] COG1943 Transposase and inactivated derivatives ... can be seen here     ..................................................................................................................