Gene putatively regulated by attenuation in C_perfringens

This operon is putativelly rgulated by Cobalamin_riboswitch

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:193 nt.     Distance to run of Ts=0 nt.   Size=27 nt.     Delta G=-15.10 kcal/mol
Antiterminator: Size=49 nt.     Delta G= -7.66 kcal/mol
Anti-antiterminator:   Size=30 nt.     Delta G= -3.70 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

tttaaaacatcaagatcctacgggaaataggaggtgttgtgctttggtaagttatatttttttagaatttttataacctctagacgcaatgtctaggggt
tttttatttctaagactaaagttctgatttaactagaaattaaagttattcatatttagattaagtgttataaagggaaatatttttagtacatattgtt
ttatttgatgcggaaatagttaaatcaaattttatcttaaaataaaaagatgataaatgggaatacaaaataaaaatataatttaaggagtagaattatt
ATG

    cbiM --- cbiN


Gene: cbiM     GI: 18309174     BI number: CPE0192     GOG: COG0310     Description: probable cobalt transport protein
Gene: cbiN     GI: 18309175     BI number: CPE0193     GOG: COG1930     Description: probable cobalt transport protei


            a
          t  g
          t  a
          t  a
          t  t
          t  t
          t  t
          t  t
           at
           ta
 gg        at
t  t       ta
 ta        ta         a
 ta        gc       c  a
 cg       a  c      g  t
 gt       a  t       cg
t  t      t  |       at
g  |       gc        gc
t  |       gt        at
 ta        ta        ta
 gt        tg        cg
 ta        ta        tg
 gt       |  c       cg
 gt        cg        cg
 at        gc        at
 gt        ta        at
                        ttttatttctaagactaaagttctgatttaactagaaattaaagttattcatatttagattaagtgttataaagggaaatatttttagtacatattgttttatttgatgcggaaatagttaaatcaaattttatcttaaaataaaaagatgataaatgggaatacaaaataaaaatataatttaaggagtagaattattATG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[P] COG0310 ABC-type Co2+ transport system, permease component ... can be seen here
[P] COG1930 ABC-type cobalt transport system, periplasmic component ... can be seen here

                                                                        Genes that have a predicted attenuator with a riboswitch:

Cobalamin_riboswitch sequence ... can be seen here
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