Gene putatively regulated by attenuation in C_perfringens
Characteristics of the secondary structures
Terminator: Distance to gene:33 nt. Distance to run of Ts=1 nt. Size=29 nt. Delta G=-15.50 kcal/mol
Antiterminator: Size=63 nt. Delta G= -6.10 kcal/mol
Anti-antiterminator: Size=38 nt. Delta G= -6.10 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTTTTACACTTGCAGAGATTATATTTTTAAAATATTCAATGTATAAGAATGAGTTAGA
AAAAGAAGATAAAAATTAActtttaatatgtaatagtgagaattttcacagtaaatattaatagtaacagtaattagagaaaaata
actaaatatatgaattttattgaaggcgtttcataaggttgatattattttcttatagaggtattaaattacaaaatatattttaaataaggttgtacta
attgtacaaccttgtaatttttataagtagaatatttagagaggatatgaagttatATG
CPE0198
Gene: CPE0198 GI: 18309180 BI number: CPE0198 GOG: ------- Description: hypothetical protei
aa
t a
t t
at
ta
gc
| a
g a
a a
g a
at
ta
at
c ta
g g | t
gt t t
at c t
at t t
gc ta a
t | ta a t
ta ta t t
at at cg
ta ta at
ta ta ta
tg a g gc
tg tg ta
at at ta
at gt gc
g g tg gc
ta | t at
at ta at
ta gc tg
at gt at
aatttttataagtagaatatttagagaggatatgaagttatATG
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