Gene putatively regulated by attenuation in C_perfringens
Characteristics of the secondary structures
Terminator: Distance from promoter:75 nt. Distance to gene:102 nt. Distance to run of Ts=0 nt. Size=35 nt. Delta G=-10.50 kcal/mol
Antiterminator: Distance from promoter:47 nt. Size=43 nt. Delta G= -6.40 kcal/mol
Anti-antiterminator: Distance from promoter:16 nt. Size=51 nt. Delta G= -8.60 kcal/mol
Nomenclature/Definitions
The most likely promoter is: tagata-taaaat. It has a score value of 77.64 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
tagatattaaaattgatattgagtaaaatcatatatattttaaaaataaaatatttccttacattaaatatttttaatgtggtaaaatagaagtatacag
cgtgtagttttaatgacgtaattccagttgttaaaactactttttttattttagaaaagtatagtgctaactacttgagttaaaagagcaatctcttaat
gatgagatgaaagcaaaattttaatttgaggaaggtgaaaatttaTTG
CPE0259
Gene: CPE0259 GI: 18309241 BI number: CPE0259 GOG: ------- Description: probable transcriptional regulato
at
t t
at g
at a c
at cg
ta at
ta tg
at at
cg ta t
at g g a t
tg at a c
tg at t c
c t gt g a
c a at cg
ta ta at
ta a | g t
ta a | t g
at a | at
ta a | at
| g ta ta
a a gt ta
a a g g ta
a g ta ta
at gc gc
ta tg at
at at ta
ctttttttattttagaaaagtatagtgctaactacttgagttaaaagagcaatctcttaatgatgagatgaaagcaaaattttaatttgaggaaggtgaaaatttaTTG
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