                                                                        Gene putatively regulated by attenuation in C_perfringens

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:165 nt.     Distance to run of Ts=0 nt.   Size=32 nt.     Delta G=-19.60 kcal/mol

                                                                        Nomenclature/Definitions

AATAAGTGCAGTTATAGGTGTACATGTAGGAGTTAAGAGTGTAGGTATAGCTTACGCT
AGAGAATCTTAAttaaatatagtttaaaaaataagcctgataaacttattagagtttatcaggcttattttattgttttaggtaaatagaa
catatatttataaaagatgaatttataaatttacgtaaaataaactactaagtattaagaggttttgtggttaaaattgtatttaaaactataatatgta
tatatattatgttaaaataatgttactaaaacattaaggagggtcaagagaGTG

    CPE0305 --- CPE0306 Gene: CPE0305     GI: 18309287     BI number: CPE0305     GOG: COG1131     Description: probable ABC transporter Gene: CPE0306     GI: 18309288     BI number: CPE0306     GOG: NOG28580     Description: hypothetical protei           tt          a  a           tg           ta           cg           at           at           at           ta           at           gc           ta           cg           cg           gc           at             tattttattgttttaggtaaatagaacatatatttataaaagatgaatttataaatttacgtaaaataaactactaagtattaagaggttttgtggttaaaattgtatttaaaactataatatgtatatatattatgttaaaataatgttactaaaacattaaggagggtcaagagaGTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [V] COG1131 ABC-type multidrug transport system, ATPase component ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in C_perfringens                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:173 nt.     Distance to run of Ts=0 nt.   Size=32 nt.     Delta G=-19.60 kcal/mol                                                                         Nomenclature/Definitions AATAAGTGCAGTTATAGGTGTACATGTAGGAGTTAAGAGTGTAGGTATAGCTTACGCT AGAGAATCTTAAttaaatatagtttaaaaaataagcctgataaacttattagagtttatcaggcttattttattgttttaggtaaatagaa catatatttataaaagatgaatttataaatttacgtaaaataaactactaagtattaagaggttttgtggttaaaattgtatttaaaactataatatgta tatatattatgttaaaataatgttactaaaacattaaggagggtcaagagaGTG     CPE0305 --- CPE0306 Gene: CPE0305     GI: 18309287     BI number: CPE0305     GOG: COG1131     Description: probable ABC transporter Gene: CPE0306     GI: 18309288     BI number: CPE0306     GOG: NOG28580     Description: hypothetical protei           tt          a  a           tg           ta           cg           at           at           at           ta           at           gc           ta           cg           cg           gc           at             tattttattgttttaggtaaatagaacatatatttataaaagatgaatttataaatttacgtaaaataaactactaagtattaagaggttttgtggttaaaattgtatttaaaactataatatgtatatatattatgttaaaataatgttactaaaacattaaggagggtcaagagaGTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [V] COG1131 ABC-type multidrug transport system, ATPase component ... can be seen here     ..................................................................................................................