Gene putatively regulated by attenuation in C_perfringens
Characteristics of the secondary structures
Terminator: Distance to gene:211 nt. Distance to run of Ts=0 nt. Size=36 nt. Delta G=-21.20 kcal/mol
Antiterminator: Size=26 nt. Delta G= -6.40 kcal/mol
Anti-antiterminator: Size=56 nt. Delta G= -3.40 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
agcagtcacaaaactgattgagtttgcaaaaagtcaaaaaataataccctctaagggcagagaaaagagcctttggagggttttgttttataaaagaggc
aagagaaaaagaggaaattatacgattaagtaaggatttaaaagttgagaaataaaaagagtaatgaaaactattaggcatatagggaaatggaaatatt
gtggtaaaagatatataataaatagtgattatagagtggttatgataagtttagtgatcgaagaaaaaatataatttggataatgattaggggaatgtct
ATG
CPE0368
Gene: CPE0368 GI: 18309350 BI number: CPE0368 GOG: ------- Description: hypothetical protei
t
a a
ta
at
at
at
a g
a g
a a
g t
a a
a a aa
gt g a
cg a a
ta A g g
at t T a a
gt cG cg
ta ta gc
g g gc gc
a g t | gt
tg a | at
tg a | at
ta gc tg
g a gc cg
a | gt ta
at gc cg
tg at cg
at ta cg
gc ta at
tttgttttataaaagaggcaagagaaaaagaggaaattatacgattaagtaaggatttaaaagttgagaaataaaaagagtaatgaaaactattaggcatatagggaaatggaaatattgtggtaaaagatatataataaatagtgattatagagtggttatgataagtttagtgatcgaagaaaaaatataatttggataatgattaggggaatgtctATG
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