                                                                        Gene putatively regulated by attenuation in C_perfringens

This operon is putativelly rgulated by Guanine_G-box

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:206 nt.     Distance to run of Ts=0 nt.   Size=30 nt.     Delta G=-14.10 kcal/mol
Antiterminator: Size=41 nt.     Delta G= -7.80 kcal/mol
Anti-antiterminator:   Size=25 nt.     Delta G= -4.30 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

taaccgtaaaatagcagactacgaggagttgtactataaattctagtaattctagtttttaaagcaacacctctaaaaaggtgttgtttttttattaagt
ataacttcctaaaagttataagaaacctttctttatatgagttttaagatttaaagtatattattccaataaaaaattctcttaaaatacttttaataga
actcatattttttattttaaaacttatagggaatttttattttggatataaatttaaatcttaatatgtaaattctaaaaaactataaggagatgaaatt
ATG

    uapC Gene: uapC     GI: 18309379     BI number: CPE0397     GOG: COG2233     Description: probable transporte             a           a  t           t  t            gc            at            ta            cg           t  t       aa           t  t      t  a   g        at       c  a t  t       at        ta t  a       at        cg gc        ta        cg Gt       a  a       at Ta       t  a       cg At       c  |       at ta       a  |       at ta        tg        cg a  a       gc        gt at        ta        at at        ta        at gc        gc        at                         tttattaagtataacttcctaaaagttataagaaacctttctttatatgagttttaagatttaaagtatattattccaataaaaaattctcttaaaatacttttaatagaactcatattttttattttaaaacttatagggaatttttattttggatataaatttaaatcttaatatgtaaattctaaaaaactataaggagatgaaattATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [F] COG2233 Xanthine/uracil permeases ... can be seen here                                                                         Genes that have a predicted attenuator with a riboswitch: Guanine_G-box sequence ... can be seen here     ..................................................................................................................