Gene putatively regulated by attenuation in C_perfringens
Characteristics of the secondary structures
Terminator: Distance to gene:161 nt. Distance to run of Ts=0 nt. Size=40 nt. Delta G=-15.90 kcal/mol
Antiterminator: Size=41 nt. Delta G= -3.70 kcal/mol
Anti-antiterminator: Size=61 nt. Delta G= -4.01 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TGATTATAATTCAGGTAAAATAAAAGTTAAATCAATAGAAAAACTTAAAGAAGAAGTT
AATTATTATAAGCCTTAAgagatataatattaaaaaaggtgcataaaatcttacattattaagattttagatgcacctttttcattt
ttttataattagtatattatagaccataaaagaagttttataaaaaaagtaaattgtacaatccattttattacaaaaaagttttaaaagtatattataa
taaaaatatgtataaattatgataaaatgttagtggtattgagagggggataaaaATG
CPE0401 --- CPE0402
Gene: CPE0401 GI: 18309383 BI number: CPE0401 GOG: ------- Description: hypothetical protein
Gene: CPE0402 GI: 18309384 BI number: CPE0402 GOG: ------- Description: hypothetical protei
A
A C
A T
A T
A A
G A
A A
T G
A A
A A
CG
TA a tt
| A t a a a
A G at c t
AT ta at
AT at ta
TA gt ta
TA a a cg
GT g a ta
AT A a at
A A A a at
AT Ta at
AT Ta at
TA Cg ta
AT Cg | g
A A Gt | a
A A A g at
A | A c cg
TG Ta gc
GC At ta
GC Ta gc
AT Ta gc
tttttcatttttttataattagtatattatagaccataaaagaagttttataaaaaaagtaaattgtacaatccattttattacaaaaaagttttaaaagtatattataataaaaatatgtataaattatgataaaatgttagtggtattgagagggggataaaaATG
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