Gene putatively regulated by attenuation in C_perfringens
Characteristics of the secondary structures
Terminator: Distance from promoter:218 nt. Distance to gene:7 nt. Distance to run of Ts=0 nt. Size=30 nt. Delta G=-14.10 kcal/mol
Antiterminator: Distance from promoter:160 nt. Size=71 nt. Delta G= -7.61 kcal/mol
Anti-antiterminator: Distance from promoter:143 nt. Size=30 nt. Delta G= -4.40 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ttgaga-tatatt. It has a score value of 70.28 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttgagaaaacttgtaccgttgggtatattgaccaagaagcttccacttctataagtggagagtagttcacttgtgaaatatagaaaagaaagcttaaata
aaaacttcctttatttataggaattagaatcaaaaaatgtttaatttttgaaaaaatacttgaataataagtaacagtatgttaatataatattaacagg
ttaaagcataaacctaatttccctatatttcatatatatatgcatttgtcctataagtatcccttagcttataggactttttgttatataTTG
CPE0429
Gene: CPE0429 GI: 18309411 BI number: CPE0429 GOG: ------- Description: hypothetical protei
c
t a
t t
ta
at
ta
at
ta
c |
c |
c |
t |
t |
t |
a |
a |
t |
c |
c |
a |
a |
at
ta
at
cg
gc
a | a
t a at
at at cc
ta at c t
at tg t t
at t t a a
ta gc tg
ta gc gc
gc at at
ta c a at
a g a t ta
t | a a at
g | ta ta
a | tg cg
cg at cg
at ta ta
at at gc
tttttgttatataTTG
..................................................................................................................