Gene putatively regulated by attenuation in C_perfringens
Characteristics of the secondary structures
Terminator: Distance to gene:160 nt. Distance to run of Ts=0 nt. Size=17 nt. Delta G= -6.20 kcal/mol
Antiterminator: Size=49 nt. Delta G= -7.90 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TATAGACATAGTTAATAGCGATGGAAAAACTGAATTTATAACAAAAGGTGATGCAAAT
AATACTCAAGATCCTGTACCTTTAGATGAAAAATTACTTGTTGGAAAGGTTGTTTTTC
AAGTGCCATATTTAGGCGCATTTTTAAGTAGCTTACAAAAAAACAAGTTAATATTTAT
AGGTTTACTTGTAGTTATTATCTTAATTGATTTTATATTCAATAAATATTTAGGAATA
AGAAAGAAAAGTTAGatttaaattataagaataatataaataatttataaactgggaggtaatttaaaTTG
CPE0515
Gene: CPE0515 GI: 18309497 BI number: CPE0515 GOG: ------- Description: hypothetical protei
G
T G
T A
G A
TA
TG
CG
AT
T T
TG
AT
AT
AT
AT
AT
GC
TA
A A
G |
A | T
T | A T
T | T T
T | A A
C | CG
CG CG
AT GC
TG TG
GC GC
ATTTTTAAGTAGCTTACAAAAAAACAAGTTAATATTTATAGGTTTACTTGTAGTTATTATCTTAATTGATTTTATATTCAATAAATATTTAGGAATAAGAAAGAAAAGTTAGatttaaattataagaataatataaataatttataaactgggaggtaatttaaaTTG
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