                                                                        Gene putatively regulated by attenuation in C_perfringens

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:187 nt.     Distance to run of Ts=0 nt.   Size=39 nt.     Delta G=-18.10 kcal/mol
Antiterminator: Size=71 nt.     Delta G= -7.50 kcal/mol
Anti-antiterminator:   Size=42 nt.     Delta G= -9.60 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GGATTTTTTTAATGATGAAGTAAGATACATACTTCTTTCTAAATAAaaagaataataattttatag
ttgaaagttcttaagatggcttataaagctgttttgaggactttttttagcttttaataaattttgattttgttaaatatttaacttaaataacttaaat
aattatttaaaaacttaaataaattgtttgaaaagggcaaggcttgtacaataattcttgtgagaagaaatttcgacaaaaatcaacacaactttaaatg
ttaaaaaaaacacaaaataggaggaaggttagtaATG

    CPE0529 Gene: CPE0529     GI: 18309511     BI number: CPE0529     GOG: COG0679     Description: probable malate permeas            ta           a  a           a  t           g  a           a  a            at            at            At            At            Ta            At           |  a           A  g           A  t           T  t            Cg            Ta            Ta   T        Ta G  A       Cg G  A      |  t        t T  G      |  t      a  a A  A      |  c       ta aT       |  t       ta tA       |  t       cg gC        Ta        gc a  A       Ta        gt t  T       Cg        tg t  A      A  |       at g  |       Ta        gt gC        At        at aT        Cg        at aT       A  g       tg gC       T  |       ta gT       A  |       cg aT        Gc        tg gT        At        ta gC        At        gc aT        Ta        at tA        Gt        at                         tttttagcttttaataaattttgattttgttaaatatttaacttaaataacttaaataattatttaaaaacttaaataaattgtttgaaaagggcaaggcttgtacaataattcttgtgagaagaaatttcgacaaaaatcaacacaactttaaatgttaaaaaaaacacaaaataggaggaaggttagtaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [R] COG0679 Predicted permeases ... can be seen here     ..................................................................................................................