                                                                        Gene putatively regulated by attenuation in C_perfringens

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:210 nt.     Distance to run of Ts=0 nt.   Size=30 nt.     Delta G= -7.60 kcal/mol
Antiterminator: Size=35 nt.     Delta G= -4.70 kcal/mol
Anti-antiterminator:   Size=34 nt.     Delta G= -3.40 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

gttatgctaaatttattagtaaagggattagtagcacaattttatagcttttactctagctggggctttcattttagcgctggatcttttatgtgcaaca
aaaactatgctcttttaactaatgggtttgtataattagtgtgatagatattaatattatagtaatattgtattataatttatttgatagaactcattaa
agtgggttctatttttttgcaatagtataatttaaacagtttaattttacatttagactattttagataaaaaggttaaaataaaaaaggagggcgaatt
ATG

    CPE0694 Gene: CPE0694     GI: 18309676     BI number: CPE0694     GOG: COG2876     Description: carboxysome formation protei            ac           t  t ca       t  c a  a      t  t c  t       ta        at gt        cg       c  t at        gc       t  t Gt        at       t  t Ta        tg        ta At       a  g       cg ta       t  g       gc t  |      t  |      g  | a  |      t  |      g  | a  |      t  |      g  | g  |      a  |      t  | cg       a  |       cg gc       c  |       gc gt       a  |       at gt        cg        tg at        gc        cg gt        at        ta                         tcttttatgtgcaacaaaaactatgctcttttaactaatgggtttgtataattagtgtgatagatattaatattatagtaatattgtattataatttatttgatagaactcattaaagtgggttctatttttttgcaatagtataatttaaacagtttaattttacatttagactattttagataaaaaggttaaaataaaaaaggagggcgaattATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [E] COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase ... can be seen here     ..................................................................................................................