                                                                        Gene putatively regulated by attenuation in C_perfringens

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:189 nt.     Distance to run of Ts=3 nt.   Size=35 nt.     Delta G=-13.00 kcal/mol
Antiterminator: Size=66 nt.     Delta G= -7.10 kcal/mol
Anti-antiterminator:   Size=32 nt.     Delta G= -3.20 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CTACTCTTGTCATGCAAAAGAGCATACTTATTAAATAAgaatatacaataaatatagtttttttaaagttga
tttttatgttttatagaaatcaactttttatattttataatttaacttggtataaatacttattttaatatagaaaataatcttttatattttatagata
cattattaaatattagggtagtaaaaccttatttatttgaaaataatggaatgaactcagttgcaaattttaaaatttatatttaatataatatatagac
aaaattttaagaggttaggactgatataATG

    CPE0787 Gene: CPE0787     GI: 18309769     BI number: CPE0787     GOG: COG1846     Description: probable transcriptional regulato            aa           a  t           t  a           a  t           a  a            cg            at           t  t           a  |           t  |            at            at            gt            At            At            Ta           |  a           |  a        t           A  g      t  t CA        At        gt G  T       At        ta A  A       Tg        at GC        Ta        ta AT        At        tg GT       T  t       ta TA       T  t       ta AT       C  t       ta aT        At        at tA        Ta        gc a  A       At        ta tA        Cg        ta aT        Gt        gc g  A       At        at tA        Gt        at cg        At        at                         ttatattttataatttaacttggtataaatacttattttaatatagaaaataatcttttatattttatagatacattattaaatattagggtagtaaaaccttatttatttgaaaataatggaatgaactcagttgcaaattttaaaatttatatttaatataatatatagacaaaattttaagaggttaggactgatataATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [K] COG1846 Transcriptional regulators ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in C_perfringens                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:199 nt.     Distance to run of Ts=0 nt.   Size=31 nt.     Delta G=-11.20 kcal/mol Antiterminator: Size=66 nt.     Delta G= -7.10 kcal/mol Anti-antiterminator:   Size=49 nt.     Delta G= -4.70 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case CTACTCTTGTCATGCAAAAGAGCATACTTATTAAATAAgaatatacaataaatatagtttttttaaagttga tttttatgttttatagaaatcaactttttatattttataatttaacttggtataaatacttattttaatatagaaaataatcttttatattttatagata cattattaaatattagggtagtaaaaccttatttatttgaaaataatggaatgaactcagttgcaaattttaaaatttatatttaatataatatatagac aaaattttaagaggttaggactgatataATG     CPE0787 Gene: CPE0787     GI: 18309769     BI number: CPE0787     GOG: COG1846     Description: probable transcriptional regulato            ag           a  t           a  t           t  g           t  a            tt            tt           t  t           t  |           t  | ga        gt A  a       at At        ta Ta        at At        tg A  a       at A  c      |  t Ta       |  t Ta       a  t At        a         t Ta        t       t  t Ta        a        gt C  a       a        ta At        c        at Ta       a         ta At       t         tg |  a      a         ta Cg        t        ta Gt        a        ta At        a        at Gt        g        gc At        A        ta At        A        ta At        T        gc At        A        at                         ttttatattttataatttaacttggtataaatacttattttaatatagaaaataatcttttatattttatagatacattattaaatattagggtagtaaaaccttatttatttgaaaataatggaatgaactcagttgcaaattttaaaatttatatttaatataatatatagacaaaattttaagaggttaggactgatataATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [K] COG1846 Transcriptional regulators ... can be seen here     ..................................................................................................................