Gene putatively regulated by attenuation in C_perfringens
Characteristics of the secondary structures
Terminator: Distance to gene:189 nt. Distance to run of Ts=2 nt. Size=35 nt. Delta G=-17.70 kcal/mol
Antiterminator: Size=63 nt. Delta G=-14.70 kcal/mol
Anti-antiterminator: Size=46 nt. Delta G= -6.69 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
cagtttcatattttaaatggtattattattaagcagttggtacgtatagtgctaattcttttgtagagcttggtttagtccttcgccggatgccaagctc
tacttttttatccaaaatttaatttaaagattttaattatgaataattattataaatattaattcttaaaggaagttcctatataaacaaattagaattc
ctatgcatatactatagcgatgtctacattactataggaagggaggcctaatcaataggtgaatattatctaatgattttatactcttattgaagatttt
ATG
CPE0946
Gene: CPE0946 GI: 18309928 BI number: CPE0946 GOG: ------- Description: hypothetical protei
a
t t
g a
cg
at
tg
gc
gt
ta
ta
gt
at
| c
| t
ag | t
a a | t
g t | t
t t | g
t t | t
a t | a cg
t A | g t c
t T | a t c
cG cg cg
tg gc cg
cg at ta
at at gt
ta tg a |
at tg t |
t t at t |
t | t t tg
t | t | gc
ta at gc
at ta ta
gt tg ta
ta at cg
at t | gc
at gc at
ta gc gc
tacttttttatccaaaatttaatttaaagattttaattatgaataattattataaatattaattcttaaaggaagttcctatataaacaaattagaattcctatgcatatactatagcgatgtctacattactataggaagggaggcctaatcaataggtgaatattatctaatgattttatactcttattgaagattttATG
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