                                                                        Gene putatively regulated by attenuation in C_perfringens

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:173 nt.     Distance to run of Ts=0 nt.   Size=28 nt.     Delta G=-14.90 kcal/mol
Antiterminator: Size=34 nt.     Delta G= -6.70 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AAGGATTTGAAAATGATCCAGTAAGATGCTTAGATTGCAGAAGAGCAAGAAAAGCTCA
AAGAAACAATAGATAAtaatttgtttattataaggttgtaagattagtcttacaaccttttttatttttataataaaaaattcttcct
aaattgaaagtatgtataatttttaatatatagtgaaaaatctatattgttattaaatagggattggaaactttaaaataaactattttctaaaagagtt
aaaatcaatattgatcttagtttagtattataattaattttggaggtgttttatATG

    CPE1000 Gene: CPE1000     GI: 18309982     BI number: CPE1000     GOG: NOG06509     Description: conserved hypothetical protei   t t  g t  t at at        ta ta       t  g At        at At        gc Ta        at At        at |  a       ta G  a       gc A  g       ta Tg        ta At        gc At        gc Cg        at At        at             ttttatttttataataaaaaattcttcctaaattgaaagtatgtataatttttaatatatagtgaaaaatctatattgttattaaatagggattggaaactttaaaataaactattttctaaaagagttaaaatcaatattgatcttagtttagtattataattaattttggaggtgttttatATG     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in C_perfringens                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:180 nt.     Distance to run of Ts=0 nt.   Size=26 nt.     Delta G=-14.00 kcal/mol Antiterminator: Size=34 nt.     Delta G= -6.70 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red The sequences of the antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case AAGGATTTGAAAATGATCCAGTAAGATGCTTAGATTGCAGAAGAGCAAGAAAAGCTCA AAGAAACAATAGATAAtaatttgtttattataaggttgtaagattagtcttacaaccttttttatttttataataaaaaattcttcct aaattgaaagtatgtataatttttaatatatagtgaaaaatctatattgttattaaatagggattggaaactttaaaataaactattttctaaaagagtt aaaatcaatattgatcttagtttagtattataattaattttggaggtgttttatATG     CPE1000 Gene: CPE1000     GI: 18309982     BI number: CPE1000     GOG: NOG06509     Description: conserved hypothetical protei   T A  A G  A At Ta Aa        ta At       t  g Ct        at At        gc Ag        at |  t       at A  t       ta G  t       gc Aa        ta At        ta At        gc Ca        gc Tt        at             tttttatttttataataaaaaattcttcctaaattgaaagtatgtataatttttaatatatagtgaaaaatctatattgttattaaatagggattggaaactttaaaataaactattttctaaaagagttaaaatcaatattgatcttagtttagtattataattaattttggaggtgttttatATG     ..................................................................................................................