                                                                        Gene putatively regulated by attenuation in C_perfringens

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:146 nt.     Distance to run of Ts=0 nt.   Size=38 nt.     Delta G=-11.60 kcal/mol
Antiterminator: Size=77 nt.     Delta G= -3.87 kcal/mol
Anti-antiterminator:   Size=44 nt.     Delta G= -9.10 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GAAGGAGATGAAAGACATGGTCATGTTGGATGTATGAGTATACCAGAAGAATATGTTG
AAAAATTCTTAAAAAAATATAATTGTAATAAAAAATAAtattaatgattaaaataatggtaatatggtttaa
ctgacaaattaccattatttttttataatctcaagtaatttaatattttattaaaaaaagtatttacatttcaaagaaaaagaatataatttaattgtag
gtattaattaataattaatattagttgattttgattgttataattttaacatatattaggtggtgtttttATG

    CPE1014 Gene: CPE1014     GI: 18309996     BI number: CPE1014     GOG: COG0426,COG0446     Description: probable flavoprotei            AA           A  T           A  A           A  A            At            Ta            At            At           |  a            Ta            Gt            Tg            Ta            At            At            Ta GA       A  a T  G      T  a AT       A  a TA       A  t        a GT       A  a      a  c TA       A  a      t  t A  |      A  t       tg GC       A  g       ta GC       A  g       gc TA       T  t      g  a TG       T  a      t  a G  A      C  a      a  | T  A      T  t       ta A  |       Ta        at CG        At        at TA       A  g       ta G  A      A  g       gc GT        At        gc TA        At        ta AT        Gt        at CG        Ta        at AT        Ta        ta GT        Gc        at                         ttttttataatctcaagtaatttaatattttattaaaaaaagtatttacatttcaaagaaaaagaatataatttaattgtaggtattaattaataattaatattagttgattttgattgttataattttaacatatattaggtggtgtttttATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [C] COG0426 Uncharacterized flavoproteins ... can be seen here [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases ... can be seen here     ..................................................................................................................