                                                                        Gene putatively regulated by attenuation in C_perfringens

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:163 nt.     Distance to run of Ts=0 nt.   Size=33 nt.     Delta G=-14.80 kcal/mol
Antiterminator: Size=67 nt.     Delta G= -7.50 kcal/mol
Anti-antiterminator:   Size=38 nt.     Delta G= -5.50 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ATTGATGAAATTTTTGAAGTGAAAAGCGAAGAAGAGTTAGATCAATGGGTTATAAAAA
ATAAGCTTGATGCTAAATAAattatggtgaaattattaattaggtttataagagataaaatcttttataaacctttttattagtc
atattttaaatttctacatatatttagacttaaatagcttttatatctagaaataaacatttattttaaatataatattttcattaaattaatattaaag
tttatttgttagctatatattttttatataatatctgtaagcttttttttagaggtgATG

    CPE1048 Gene: CPE1048     GI: 18310030     BI number: CPE1048     GOG: -------     Description: hypothetical protei            gg           t  t           a  g            ta            ta           a  a            At            At            Ta            At            At           A  a           T  |           C  |   A       G  | A  A       Ta A  A       At TA        Gt AT        Ta         a TA        Tg       a  a TA        Cg        ta G  G       Gt        at GC        At        gc GT        At        at T  |       Ta        gt A  |       At        at AT       A  a       at CG       A  a       ta TA       A  g       at AT       A  a       ta |  G      A  g       ta GC        Ta        ta AT        At        gc TA        Ta        gc TA        Ta        at                         ttttattagtcatattttaaatttctacatatatttagacttaaatagcttttatatctagaaataaacatttattttaaatataatattttcattaaattaatattaaagtttatttgttagctatatattttttatataatatctgtaagcttttttttagaggtgATG     ..................................................................................................................