Gene putatively regulated by attenuation in C_perfringens

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:153 nt.     Distance to run of Ts=0 nt.   Size=33 nt.     Delta G=-17.70 kcal/mol

                                                                        Nomenclature/Definitions

AAAAGAAGTTCTCATAGTAAAAAACAAAGAGGAAACAAATCAAGAGGATTTGATCAAA
AGAGCCAAAGAGGGTCAAAAGGAAAGAAAAGAAGATAAttaaatataagaaaggtggttattgagttttttg
cttaataaccactttttatgcatatatttacagttaataagtaatctttattttaatgagaatatggagtaatttttaaaagtaaatttaaattttgctt
gttattaaaacttttaattaggtgatataattaaataattatgatatagttaataaagagttaacgaaaaATG

    CPE1195 --- CPE1194


Gene: CPE1195     GI: 18310177     BI number: CPE1195     GOG: COG1924,COG3580     Description: conserved hypothetical protein
Gene: CPE1194     GI: 18310176     BI number: CPE1194     GOG: COG3581     Description: hypothetical protei


           t
         t  t
         t  t
          tg
          gc
          at
          gt
          ta
          ta
          at
          ta
          ta
          gc
          gc
          ta
          gc
          gt
            ttttatgcatatatttacagttaataagtaatctttattttaatgagaatatggagtaatttttaaaagtaaatttaaattttgcttgttattaaaacttttaattaggtgatataattaaataattatgatatagttaataaagagttaacgaaaaATG


                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[I] COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) ... can be seen here
[S] COG3580 Uncharacterized protein conserved in bacteria ... can be seen here
[S] COG3581 Uncharacterized protein conserved in bacteria ... can be seen here

    ..................................................................................................................