                                                                        Gene putatively regulated by attenuation in C_perfringens

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:196 nt.     Distance to run of Ts=0 nt.   Size=27 nt.     Delta G=-13.40 kcal/mol
Antiterminator: Size=45 nt.     Delta G= -5.50 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTCACATTTGATGTACCTGTTTTTGCAGGATAAtaattaaagtgatttacagtttaattaaaataggagtccagtt
gactcctattttttttgctattactattttattctttataattatgattaaaatcatatctttacaaaaaataagaaatttaataaggatattattatag
agtttctttaggaattataaagtttacttacctaataaaataattaaaatcttaaataagtaaatgaataattaaaacttttgttaagtaaaataataga
gaagtatttttaggagaatagattTTG

    CPE1230 Gene: CPE1230     GI: 18310212     BI number: CPE1230     GOG: -------     Description: hypothetical protei   t t  t a  a gc ta g  g at at at ta ta at at         g ta       a  t |  a      c  t |  a       cg |  a       ta |  t       gc |  a       at |  g       gc A  g       gc A  a       at Tg        ta At        at Gc        at Gc        at             tttttgctattactattttattctttataattatgattaaaatcatatctttacaaaaaataagaaatttaataaggatattattatagagtttctttaggaattataaagtttacttacctaataaaataattaaaatcttaaataagtaaatgaataattaaaacttttgttaagtaaaataatagagaagtatttttaggagaatagattTTG     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in C_perfringens                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:209 nt.     Distance to run of Ts=0 nt.   Size=27 nt.     Delta G=-13.40 kcal/mol Antiterminator: Size=45 nt.     Delta G= -5.50 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red The sequences of the antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case TTCACATTTGATGTACCTGTTTTTGCAGGATAAtaattaaagtgatttacagtttaattaaaataggagtccagtt gactcctattttttttgctattactattttattctttataattatgattaaaatcatatctttacaaaaaataagaaatttaataaggatattattatag agtttctttaggaattataaagtttacttacctaataaaataattaaaatcttaaataagtaaatgaataattaaaacttttgttaagtaaaataataga gaagtatttttaggagaatagattTTG     CPE1230 Gene: CPE1230     GI: 18310212     BI number: CPE1230     GOG: -------     Description: hypothetical protei   a g  t t  t gt aa a  c aa tg tt at at ta Aa         g At       a  t |  t      c  t |  a       cg |  a       ta |  a       gc |  a       at |  t       gc T  a       gc A  g       at Gg        ta Ga        at Ag        at Ct        at             tttttgctattactattttattctttataattatgattaaaatcatatctttacaaaaaataagaaatttaataaggatattattatagagtttctttaggaattataaagtttacttacctaataaaataattaaaatcttaaataagtaaatgaataattaaaacttttgttaagtaaaataatagagaagtatttttaggagaatagattTTG     ..................................................................................................................