                                                                        Gene putatively regulated by attenuation in C_perfringens

This operon is putativelly rgulated by Glycine_cleavage

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:225 nt.    Distance to gene:0 nt.     Distance to run of Ts=0 nt.   Size=28 nt.     Delta G= -9.60 kcal/mol
Antiterminator:    Distance from promoter:169 nt. Size=70 nt.     Delta G=-18.90 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: atgatt-tataaa. It has a score value of 66.93 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

atgattacttatataatgtctattataaattaaaattcaatatgttcggatgaaggtaatgggagagtgatattttaaatatccaccgaagagggaaatc
tttcaggtattaggaccgttactggacgagcctctggagagactcttttaaaaaagagcaccgaaggagcaaggtcaaattttttgactgaaactctcag
gtaaaaggacagaggataaggttagttacttaaattttttaagtatccttattctcctccgcaaatttaaatttaaggaggattttttttATG

    CPE1419 Gene: CPE1419     GI: 18310401     BI number: CPE1419     GOG: COG1115     Description: probable amino acid transport protei   t t  t at at at ta ta cg at ta t  t g  | a  | t  | t  | gc gc at at ta at gt gc at gc        ta a  c      t  a c  |       ta at        at gc        at gc        at a  g      c  a a  c      g  a a  a       cg a  a       cg ta        ta gt        cg gt        cg at        ta             ttttttttATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [E] COG1115 Na+/alanine symporter ... can be seen here                                                                         Genes that have a predicted attenuator with a riboswitch: Glycine_cleavage sequence ... can be seen here     ..................................................................................................................