Gene putatively regulated by attenuation in C_perfringens_pl-pCP13
Characteristics of the secondary structures
Terminator: Distance from promoter:107 nt. Distance to gene:116 nt. Distance to run of Ts=0 nt. Size=23 nt. Delta G=-13.00 kcal/mol
Antiterminator: Distance from promoter:47 nt. Size=65 nt. Delta G= -4.80 kcal/mol
Nomenclature/Definitions
The most likely promoter is: tttatt-tatagt. It has a score value of 70.28 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
tttattattgatttaattttccattatagtgctagttatttttactattataaagtttaataatttacattgtttaaactaattgctaaatagaatttta
actcatgttttaaaagttaaatatatattttaaatttaaggtgtcccacggggacatctttttgtttttaaaaggtaaatatgaataaaatttagataaa
agtgtaaaagaattatttttattttaaatttgttaaaattttgatataattgaattgtaaaaaaaatttcaggggggaatataaATG
cpb2
Gene: cpb2 GI: 15081497 BI number: PCP17 GOG: ------- Description: beta2-toxi
t
t t
g t
t a
a a
c a
ta
cg
at
at
ta
ta
ta
t t
a a
a t
g a
at
ta
at
at
at
t t
c a c
g | a g
ta cg
ta cg
at cg
at ta
| t gc
| a ta
| a gt
tg gc
cg at
at at
tttgtttttaaaaggtaaatatgaataaaatttagataaaagtgtaaaagaattatttttattttaaatttgttaaaattttgatataattgaattgtaaaaaaaatttcaggggggaatataaATG
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