Gene putatively regulated by attenuation in C_tetani_E88
Characteristics of the secondary structures
Terminator: Distance to gene:66 nt. Distance to run of Ts=0 nt. Size=31 nt. Delta G=-16.10 kcal/mol
Antiterminator: Size=58 nt. Delta G=-19.33 kcal/mol
Anti-antiterminator: Size=47 nt. Delta G=-10.70 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ggtgattatagctagaaGGTAACACCCGTTCCCATGCCGAACACGATGGTTAAGCTTCTAAGCGC
CGATGGTACTGCAAGGGTGACCTTGTGGGAGAGTAGGACGttgccaggttagtatGATCCACTA
GCTCAGTCGGTAGAGCACATGACTTTTAATCATGGTGTCCGGGGTTCGATTCCCCGGT
GGATCACCAaaaaaactgtctacaattaatttgtggacagttttttattgcatttaaataatattaaagatttattaactatttttaagtaaat
tgacataaataacatagtaTTG
CTC00064
Gene: CTC00064 GI: 28209838 BI number: CTC00064 GOG: ------- Description: hypothetical protei
G
C A
T T
T T
GC
T GC
T T GC
T A GC
C A CG
AT CG
GC | T
TA | G
AT | G
CG | A
A | T T
CG GC
GT TA a
A G GC t a
G T GC t t
A | TA at
T | A a at
GC C a cg
GC T a at
CG A a tg
T | A a cg
G | T a ta
A | T c gc
CG T t ta
TG T | cg
CG Cg at
GT At at
AT Gc at
tttattgcatttaaataatattaaagatttattaactatttttaagtaaattgacataaataacatagtaTTG
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