                                                                        Gene putatively regulated by attenuation in C_tetani_E88

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:171 nt.     Distance to run of Ts=2 nt.   Size=37 nt.     Delta G=-15.90 kcal/mol
Antiterminator: Size=43 nt.     Delta G= -3.40 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AATAGAAGAATATAATTTATCAAAATAAtaataaaaacaataaataatctgtaatataattgaatacatacgatttgaa
aagctattatcaaagtgatatttattatcattttgataatagctttatttatgaaataatctaaataaataaacttatattttatttaaatataggtaat
aaatagataagttagggaaatgataaataaacattatttaaatttcaaataaatttattaattggtatgtatattgctattaaataaaagtaactaaata
tatattttggaggtatgagagATG

    CTC00071 Gene: CTC00071     GI: 28209845     BI number: CTC00071     GOG: COG1171     Description: threonine dehydratase biosyntheti ct g  a at at a  a at         t gc       t  a ta       t  t ta        at ta        ta a  |       at g  |       gc c  |       ta a  |       gt tg        at at        at cg        at |  a       cg at        ta ta        at at        ta at        ta gt        at ta        ta             gctttatttatgaaataatctaaataaataaacttatattttatttaaatataggtaataaatagataagttagggaaatgataaataaacattatttaaatttcaaataaatttattaattggtatgtatattgctattaaataaaagtaactaaatatatattttggaggtatgagagATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [E] COG1171 Threonine dehydratase ... can be seen here     ..................................................................................................................