Gene putatively regulated by attenuation in C_tetani_E88
Characteristics of the secondary structures
Terminator: Distance to gene:90 nt. Distance to run of Ts=0 nt. Size=23 nt. Delta G=-11.70 kcal/mol
Antiterminator: Size=77 nt. Delta G= -5.09 kcal/mol
Anti-antiterminator: Size=50 nt. Delta G= -5.90 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AGGAAAAATGAAATATTTAATATATGGTATACCAGGTACTAAGAAATTAAAGCATCAA
CCATTTAGAGGGAAAACAGGATTTGTAACTTGGGTTCCTTCAAAATCTAAAGAAGATA
ATGTTAATGGATATTGGCTAATGTTTTATGATTTCAAAAACTCTACTATATTAATTCC
TTCAAAAAAATAGgtgtgcattgcatacctattttttaatattatttaaccttctatcatatatttaagtattagaatttttaggaggtga
gtcccttttgaataagtcaatttaaaaggggttaaATG
CTC00250
Gene: CTC00250 GI: 28210015 BI number: CTC00250 GOG: NOG15122 Description: conserved membrane-associated protei
AC
T T
C A
T T
C A
A T
A T
A A
A A
A T
C T
T C
T C
T T
AT AT
A G GC
TG TA
TA A A
GT TA
TA TA
AT TA
AT TA
TG G A
A G T |
GC A |
AT AT
| A TA
| A CG
| T G |
A G G | t
GT T | a t
AT Tg cg
AT At gc
AT Tg ta
TA At gt
| T G g ta
CG Gc gc
TA Ta Gc
AT At At
AT At Ta
AT Tg At
tttttaatattatttaaccttctatcatatatttaagtattagaatttttaggaggtgagtcccttttgaataagtcaatttaaaaggggttaaATG
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