Gene putatively regulated by attenuation in C_tetani_E88
Characteristics of the secondary structures
Terminator: Distance from promoter:176 nt. Distance to gene:0 nt. Distance to run of Ts=0 nt. Size=33 nt. Delta G=-14.80 kcal/mol
Antiterminator: Distance from promoter:128 nt. Size=66 nt. Delta G= -9.20 kcal/mol
Anti-antiterminator: Distance from promoter:116 nt. Size=26 nt. Delta G= -5.20 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTCAGT-TATAAT. It has a score value of 64.93 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTCAGTGAAATATAATTTCCCTATAATACAAAACTCTTGTCCAGCTAATGGATTTACT
AAAAGAGAATCTATAAAAAACTTAATAGAATCTCTTAAAAAAGATTTTCCTGATCTGG
AAAACCGATTGTTAGGAGCTTTAACAAATTCCAAGCAACTTTGTATTTGGGATAAATA
AatttggtaaacttagtataatattaacaatacctccttcatataaattattgaggaggtgttgttTTG
CTC00319
Gene: CTC00319 GI: 28210079 BI number: CTC00319 GOG: NOG07113 Description: conserved protei
a
t a
at
ta
gt
at
ta
ta
c c
a a
a a
at
ta
gc
gc
t |
t |
t |
a |
A |
A |
T |
A | a
A | a a
A | t t
CT T | at
A T At ta
AT Gc at
CG Gc c t
GT Gt tg
| A T t ta
| T T c cg
AT Ta cg
AT At ta
CG Ta cg
CG Gt cg
TG Ta at
TA Ta tg
AT Ta at
tgttTTG
..................................................................................................................