                                                                        Gene putatively regulated by attenuation in C_tetani_E88

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:142 nt.     Distance to run of Ts=0 nt.   Size=34 nt.     Delta G=-20.60 kcal/mol
Antiterminator: Size=47 nt.     Delta G= -7.90 kcal/mol
Anti-antiterminator:   Size=37 nt.     Delta G= -6.40 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

agacctgccgtataataatagcgagagggttagtagtgagaggaaaattctgggtagcaaaggctccagcaggcgagtgtggggtcaaagatcaggtcaa
ctagcttaaaacaaaaggcttcatctgctttttagcagttgaagccttttgttttttttagagtaaaaaataaattaatttaaattaatttaatattttg
taaattagcattaaataacttgatatatatattaaatagtattaaaatatatataacatgaaatttaaaaataataaacattaggagaggggctgaagct
ATG

    CTC00325 Gene: CTC00325     GI: 28210085     BI number: CTC00325     GOG: COG1544     Description: SSU ribosomal protein S30            ac           a  a           a  a           a  a            ta   a        tg a  a       cg cg        gc ta        at        tt gt       t  t      t  t gc       c  c       ta |  a      a  |       cg |  g      a  |       gc g  g      c  |       ta g  t       ta        cg t  c       gt       t  t g  a       gc        at ta        at        cg gc        cg        ta at       t  c       ta g  a       at        cg cg        gt        gc gc        at        gc gt        at        at at        at        at                         ttgttttttttagagtaaaaaataaattaatttaaattaatttaatattttgtaaattagcattaaataacttgatatatatattaaatagtattaaaatatatataacatgaaatttaaaaataataaacattaggagaggggctgaagctATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [J] COG1544 Ribosome-associated protein Y (PSrp-1) ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in C_tetani_E88                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:149 nt.     Distance to run of Ts=0 nt.   Size=32 nt.     Delta G=-19.70 kcal/mol Antiterminator: Size=47 nt.     Delta G= -7.90 kcal/mol Anti-antiterminator:   Size=37 nt.     Delta G= -6.40 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case agacctgccgtataataatagcgagagggttagtagtgagaggaaaattctgggtagcaaaggctccagcaggcgagtgtggggtcaaagatcaggtcaa ctagcttaaaacaaaaggcttcatctgctttttagcagttgaagccttttgttttttttagagtaaaaaataaattaatttaaattaatttaatattttg taaattagcattaaataacttgatatatatattaaatagtattaaaatatatataacatgaaatttaaaaataataaacattaggagaggggctgaagct ATG     CTC00325 Gene: CTC00325     GI: 28210085     BI number: CTC00325     GOG: COG1544     Description: SSU ribosomal protein S30            aa           t  a           t  a           c  c            ga   a        aa a  a       ta cg        ca ta        ag gt       a  g       tt gc       c  c      t  t |  a      t  |       ta |  g      g  |       cg g  g      g  |       gc g  t       at        ta t  c       ct        cg g  a       tc       t  t ta        aa        at gc        gt        cg at       a  c       ta g  a       at        ta cg        ag        cg gc        cc        gc gt        tt        gc at        gt        at                         tttgttttttttagagtaaaaaataaattaatttaaattaatttaatattttgtaaattagcattaaataacttgatatatatattaaatagtattaaaatatatataacatgaaatttaaaaataataaacattaggagaggggctgaagctATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [J] COG1544 Ribosome-associated protein Y (PSrp-1) ... can be seen here     ..................................................................................................................