Gene putatively regulated by attenuation in C_tetani_E88

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:120 nt.    Distance to gene:101 nt.     Distance to run of Ts=0 nt.   Size=19 nt.     Delta G= -7.20 kcal/mol
Antiterminator:    Distance from promoter:83 nt. Size=42 nt.     Delta G= -5.40 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: atcatt-tagaat. It has a score value of 64.26 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

atcattttatgaaaaaaattatgtagaatacgttataaaatgctaaataaatttcaatatagtaaaaatagaaagtttaagtcttgtaccagttattcaa
taacaaaatgaagaagaatatgtgagtaaatttactaatatttagatagcctttgattttttcaaaggttatttgtacgtaatattaaattttaaaggat
aatttaaaaaaacatgtgttctgttcagagaatttgatgtatacttaaatatataatactttggaggaataatATG

    CTC00387 --- CTC00388


Gene: CTC00387     GI: 28210142     BI number: CTC00387     GOG: COG0338     Description: putative adenine-specific DNA methyltransferase
Gene: CTC00388     GI: 28210143     BI number: CTC00388     GOG: -------     Description: hypothetical protei



 ta
t  c
t  t
a  a
a  a
 at
 ta
 gt
 at
 gt
 ta
g  g        t
 ta       t  t
 at       t  t
 ta        at
a  g       gc
a  c       ta
 gc        ta
 at        ta
 at        cg
 gt        cg
            ttatttgtacgtaatattaaattttaaaggataatttaaaaaaacatgtgttctgttcagagaatttgatgtatacttaaatatataatactttggaggaataatATG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[L] COG0338 Site-specific DNA methylase ... can be seen here

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