Gene putatively regulated by attenuation in C_tetani_E88
Characteristics of the secondary structures
Terminator: Distance from promoter:117 nt. Distance to gene:84 nt. Distance to run of Ts=3 nt. Size=18 nt. Delta G= -6.70 kcal/mol
Antiterminator: Distance from promoter:75 nt. Size=47 nt. Delta G= -5.50 kcal/mol
Anti-antiterminator: Distance from promoter:36 nt. Size=49 nt. Delta G=-12.80 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTGTGT-TAAATT. It has a score value of 68.27 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGTGTATTGACGGAATCATGTGTAAATTGAGGCCTACATTTTTGACATTGATATTTT
TGATTAGCCTGCTTGTCAAATCCAAACTTATATAGTTTGTCACTATGGCAGCGAGGAC
ACTTAATTTTAGTTTTGTTCATtgttcttctctccttttctagggggataattgtttttagtcaaacttattgtatttccttat
gggaagaagagcaatgttcatattaacttaatagaacggactttaatattgggggaaatatATG
CTC00390
Gene: CTC00390 GI: 28210145 BI number: CTC00390 GOG: ------- Description: hypothetical protei
T
A A
T T T
TA G T
CG A T
AT T T
AT T G
AT T T
CG T T
| T A C
| C A A
C A T T
T C T t
A T Cg
A A At
AT C |
CG At
TG Gc
GC Gt tc
T | At t t
TA Gc ta
CG C t tg
GC Gc cg
| G At cg
TA C | tg
CG Gc cg
CG Gc ta
taattgtttttagtcaaacttattgtatttccttatgggaagaagagcaatgttcatattaacttaatagaacggactttaatattgggggaaatatATG
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