                                                                        Gene putatively regulated by attenuation in C_tetani_E88

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:148 nt.     Distance to run of Ts=0 nt.   Size=30 nt.     Delta G=-13.60 kcal/mol
Antiterminator: Size=46 nt.     Delta G= -3.60 kcal/mol
Anti-antiterminator:   Size=46 nt.     Delta G= -5.70 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AAATGAGGAGCAAACCTTTAGAAAACTTGGTATAGATATAACTTGTGATCCAGAGTAC
CCATCAGAAAGTCTTTATTATAATAATTAAtattataaagataatgtgaacattaaagccgattgttattaaataata
ataatcggtattttttctattaagtccaaataagtattttgaaaagtggaatttaccaaacttgtcaaggaaacatgtaagctatataatagtatgagaa
aataagcaggtttaatttaactatccttattttatgtaaattaaagtatgagaggaagtaaataATG

    CTC00403 Gene: CTC00403     GI: 28210156     BI number: CTC00403     GOG: COG0550     Description: DNA topoisomerase            ga AT       t  a A  T       gc T  A       ta A  A       at At        at Ta        ta At       |  a T  t      a  a Ta       g  g       aa At       a  c      a  t Ta       a  c       ta Ta       a  g       ta Ta        ta        at Cg        at        ta Ta       |  t       ta Gt       t  g       gt A  a      t  t       ta A  a       at        ta A  t       ta        at G  g       At        gc At        At        cg Cg        Ta        cg Ta        Ta        gt                         attttttctattaagtccaaataagtattttgaaaagtggaatttaccaaacttgtcaaggaaacatgtaagctatataatagtatgagaaaataagcaggtttaatttaactatccttattttatgtaaattaaagtatgagaggaagtaaataATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [L] COG0550 Topoisomerase IA ... can be seen here     ..................................................................................................................