                                                                        Gene putatively regulated by attenuation in C_tetani_E88

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:179 nt.     Distance to run of Ts=0 nt.   Size=30 nt.     Delta G=-15.40 kcal/mol

                                                                        Nomenclature/Definitions

GCTAAGATAATTAAATAAaaatattaaatgtagtgaagaatttaaacttttattttagattctatacattagtaatatacgaaccca
ggacttttataagttttgggttttttattgttatttatatatggaatcatcttgttataatgttaattatatagatgtatgttaagaattaagaaatttc
tacgataacaatagaaaaatggagtattggtctgggaacacatataaatattataagttacttaatattgtgttcatgatcatctgattatattaagaag
gaaggataggtttATG

    CTC00520 --- CTC00521 Gene: CTC00520     GI: 28210262     BI number: CTC00520     GOG: COG2247,COG4886     Description: cwp66 homolog/N-acetylmuramoyl-L-alanine amidase Gene: CTC00521     GI: 28210263     BI number: CTC00521     GOG: COG2247     Description: cwp66 homolog/N-acetylmuramoyl-L-alanine amidas           ta          t  t           ta           ta           cg           at           gt           gt           at           cg           cg           cg           at           at           gt             tttattgttatttatatatggaatcatcttgttataatgttaattatatagatgtatgttaagaattaagaaatttctacgataacaatagaaaaatggagtattggtctgggaacacatataaatattataagttacttaatattgtgttcatgatcatctgattatattaagaaggaaggataggtttATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [M] COG2247 Putative cell wall-binding domain ... can be seen here [S] COG4886 Leucine-rich repeat (LRR) protein ... can be seen here [M] COG2247 Putative cell wall-binding domain ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in C_tetani_E88                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:186 nt.     Distance to run of Ts=0 nt.   Size=30 nt.     Delta G=-15.40 kcal/mol                                                                         Nomenclature/Definitions GCTAAGATAATTAAATAAaaatattaaatgtagtgaagaatttaaacttttattttagattctatacattagtaatatacgaaccca ggacttttataagttttgggttttttattgttatttatatatggaatcatcttgttataatgttaattatatagatgtatgttaagaattaagaaatttc tacgataacaatagaaaaatggagtattggtctgggaacacatataaatattataagttacttaatattgtgttcatgatcatctgattatattaagaag gaaggataggtttATG     CTC00520 --- CTC00521 Gene: CTC00520     GI: 28210262     BI number: CTC00520     GOG: COG2247,COG4886     Description: cwp66 homolog/N-acetylmuramoyl-L-alanine amidase Gene: CTC00521     GI: 28210263     BI number: CTC00521     GOG: COG2247     Description: cwp66 homolog/N-acetylmuramoyl-L-alanine amidas           ta          t  t           ta           ta           cg           at           gt           gt           at           cg           cg           cg           at           at           gt             tttattgttatttatatatggaatcatcttgttataatgttaattatatagatgtatgttaagaattaagaaatttctacgataacaatagaaaaatggagtattggtctgggaacacatataaatattataagttacttaatattgtgttcatgatcatctgattatattaagaaggaaggataggtttATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [M] COG2247 Putative cell wall-binding domain ... can be seen here [S] COG4886 Leucine-rich repeat (LRR) protein ... can be seen here [M] COG2247 Putative cell wall-binding domain ... can be seen here     ..................................................................................................................