                                                                        Gene putatively regulated by attenuation in C_tetani_E88

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:159 nt.    Distance to gene:61 nt.     Distance to run of Ts=0 nt.   Size=38 nt.     Delta G=-20.20 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: TTAATT-TATAGT. It has a score value of 76.31 and is shown in blue

TTAATTGGAGCTATAATTTTTGGTATAGTATTACAAGATATAGTTATAACAATACCTT
TCTTAGCCAATATATTTAAAGTATATGATCTATTGCTAAAGGACTGGTTATTGGTTGG
AATACTTTCTATAATACCTTTAATTGTAAATGAAATAGCTAAAATATTTATAAGAGCC
AGATCTAAATAGtataaaatgtacctagagtttagactttaggtacattttatttttacaaatttatgaacctatgacatagtgaaacgta
taagataagtggaagggggataaaaaTTG

    CTC00665 Gene: CTC00665     GI: 28210389     BI number: CTC00665     GOG: COG1595     Description: RNA polymerase sigma facto           ta          t  g           ta           gc           at           gt           at           ta           cg           cg           at           ta           gc           ta           at           at           at           at           ta             tttttacaaatttatgaacctatgacatagtgaaacgtataagataagtggaagggggataaaaaTTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog ... can be seen here     ..................................................................................................................